Changing reaction rate during simulation

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Adam
Administrator

Posts: 49

Changing reaction rate during simulation Jul 16, 2021 18:23:54 GMT

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Post by Adam on Jul 16, 2021 18:23:54 GMT

The way how change the reaction rate do it is to change the fwd_rate (or rev_rate) attribute of a ReactionRule mcell.org/mcell4_documentation/generated/subsystem.html#id14

Some examples are here:
github.com/mcellteam/mcell_tests/blob/afcdd35493f979e6f8edeef4e2b0b4bd5ce4d42b/tests/pymcell4/2500_rxn_rate_change_bimol_box_it_100/model.py#L71
github.com/mcellteam/mcell_tests/blob/afcdd35493f979e6f8edeef4e2b0b4bd5ce4d42b/tests/pymcell4/2700_concentration_based_rxn_rate/model.py#L107

Ali
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Changing reaction rate during simulation Aug 2, 2021 17:52:13 GMT

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Post by Ali on Aug 2, 2021 17:52:13 GMT

Hello Adam,

thank you. The error: Molecule s escaped the simulation area defined by partition size. Diffused m...try object box that keeps all molecules within given area.... Another option is to increase partition size.

Bests regards,
Ali

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Changing reaction rate during simulation

Post by Adam on Jul 16, 2021 18:23:54 GMT

Post by Ali on Aug 2, 2021 17:52:13 GMT

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