ashm
New Member
Posts: 1
|
Post by ashm on Mar 30, 2022 22:32:42 GMT
Hello,
I am in the process of converting my MCell3.mdl files to be compatible with MCell4/CellBlender. I received the following warning and error while trying to perform the conversion. I was looking for resources on specific fixes I need to perform on my old code to be compatible with MCell4.
Error: TODO_CONVERSION: reactions with 3 reactants are not supported
Question: Not sure which reactants are not being supported? Do I need to look into reaction probabilities or does this have to do with orientation?
Warning: Partitioning was specified, but it is smaller than the automatically determined bounding box. You may need to increase the partition size if get an error later that a vertex does not fit any partition.
Question: Again, not sure if this would need to be fixed in the MDL/Data Model prior to running the conversion?
I am hoping this is the best space to address these questions?
Thanks, am
|
|
|
Post by tmbartol on Apr 6, 2022 16:15:09 GMT
Hello,
What command are you using to perform the conversion? The "3 reactants" message has do with the syntax of the reaction itself but not the probabilities or orientations. I think we would need to see your MDL file or Data Model file to be sure. The partitioning warning could be fixed after the conversion if that is more convenient than fixing it in the original MDL file.
Tom
|
|